PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010930661.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NAC
Protein Properties Length: 200aa    MW: 22532.3 Da    PI: 5.4944
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010930661.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM118.56.3e-3781261128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGf+F P+deelv ++L +k+++ +++   +i+++++++++PwdL+ k+ ++ + wyfF++r++        nr t++gyWk  g ++ ++s+
  XP_010930661.1   8 LPPGFHFFPSDEELVIHFLYRKAAHLPCHP--IIPTIELHYCDPWDLNGKALQGGNYWYFFTHRAQ--------NRETANGYWKPIGVEECITSS 92 
                     79***********************99776..8**************977778899******9854........8999***************98 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++++vglkktL+fy g+ p+g kt+W+mhey+l
  XP_010930661.1  93 sDHNDVGLKKTLIFYVGEPPEGIKTNWIMHEYHL 126
                     77888***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.19E-465165IPR003441NAC domain
PROSITE profilePS5100543.2558166IPR003441NAC domain
PfamPF023651.8E-239126IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MGEGTTNLPP GFHFFPSDEE LVIHFLYRKA AHLPCHPIIP TIELHYCDPW DLNGKALQGG  60
NYWYFFTHRA QNRETANGYW KPIGVEECIT SSSDHNDVGL KKTLIFYVGE PPEGIKTNWI  120
MHEYHLLDGV LGNASSGGGG SSRSLKKRRS PRIESNKWVI CRVYESSCGS QGFHDEGMEL  180
SCLDEVFLSL DDLDEVSLPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swp_D1e-37717119173NAC domain-containing protein 19
3swp_C1e-37717119173NAC domain-containing protein 19
3swp_B1e-37717119173NAC domain-containing protein 19
3swp_A1e-37717119173NAC domain-containing protein 19
3swm_D1e-37717119173NAC domain-containing protein 19
3swm_C1e-37717119173NAC domain-containing protein 19
3swm_B1e-37717119173NAC domain-containing protein 19
3swm_A1e-37717119173NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010930661.11e-149PREDICTED: NAC transcription factor 25-like
SwissprotQ8GWK65e-67NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A0A9FYS56e-90A0A0A9FYS5_ARUDO; Uncharacterized protein
STRINGGSMUA_Achr10P10790_0014e-88(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36673679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.17e-67xylem NAC domain 1